About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20030433_20036861_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20030433 - 20036861
Intron Length:
6429

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCCTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
ATATTTCTAATG
Flanking Amino Acid:
KLFANKEAAAGPNELDCGLI
Intron Amino Acid Position:
492

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.8
1.01
0.7
85.4
19.4
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
83.4
0.75
0.7
82.2
28.1
Minor 5ss
34.1
-1.8
2.8
39.9
46.1
Minor BPS
52
-0
1.7
58.67
37.4

Associated Gene:

Gene:
AK5
Ensembl Gene ID:
ENSAPLG00000008100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008474
19990637 - 20085448
94812