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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20064579_20075201_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20064579 - 20075201
Intron Length:
10623

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGAGTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTTTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AATTAAT
U12 Branch Point Sequence:
GAGTTCTTACAT
Flanking Amino Acid:
VAQAISFEDQICTPDLVVFL
Intron Amino Acid Position:
398

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.78
0.9
81.8
29.7
Major BPS
83
0.82
0.8
82
24.9
Major PPT
84.9
0.79
0.8
80.2
32
Minor 5ss
38.1
-1.3
3.6
56.6
42
Minor BPS
52.4
0.15
1.7
66.77
43.6

Associated Gene:

Gene:
AK5
Ensembl Gene ID:
ENSAPLG00000008100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008474
19990637 - 20085448
94812