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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20075613_20081568_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20075613 - 20081568
Intron Length:
5956

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGAAAG
5'SS Class:
strong_major
3'SS Sequence:
TACTTAACAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TTATACTTAACA
Flanking Amino Acid:
RPRPKIILVIGGPGSGKGTQ
Intron Amino Acid Position:
303

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
0.9
73.4
37.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
61.8
0.27
1
56.9
37.4
Minor 5ss
38.9
-1.2
2.8
48
47.7
Minor BPS
79.6
0.93
1.4
85.8
32.6

Associated Gene:

Gene:
AK5
Ensembl Gene ID:
ENSAPLG00000008100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008474
19990637 - 20085448
94812