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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20081737_20082770_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20081737 - 20082770
Intron Length:
1034

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAT
5'SS Class:
strong_major
3'SS Sequence:
TACTGTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATTTCCACAATT
Flanking Amino Acid:
GQSRRSFFRNVMPDNSNFPY
Intron Amino Acid Position:
247

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.7
0.82
0.9
80.4
33.7
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
82
0.72
0.9
75.8
37.9
Minor 5ss
34.1
-1.8
3.3
45.4
43.9
Minor BPS
63.2
0.49
1.8
84.1
36.3

Associated Gene:

Gene:
AK5
Ensembl Gene ID:
ENSAPLG00000008100
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008474
19990637 - 20085448
94812