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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20103390_20106717_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20103390 - 20106717
Intron Length:
3328

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
GTGTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATGTCAA
U12 Branch Point Sequence:
AATGTCAAAAAT
Flanking Amino Acid:
RSVKRLGIPDSHIVLMLADD
Intron Amino Acid Position:
73

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
66.8
0.42
1.1
69.4
37.7
Major PPT
82.4
0.73
0.9
76.6
37.7
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
43.6
-0.4
2
61.35
42.1

Associated Gene:

Gene:
PIGK
Ensembl Gene ID:
ENSAPLG00000008332
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000048439
20099372 - 20172547
73176
ENSAPLT00000008715
20099372 - 20161333
61962