Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20149440_20161240_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20149440 - 20161240

Intron Length:

11801

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCCTT

5'SS Class:

strong_major

3'SS Sequence:

TTTTGGTAACCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CTTTCAT

U12 Branch Point Sequence:

ATTTTGGTAACC

Flanking Amino Acid:

QLPVAQIIHQFYCSRGDVFG

Intron Amino Acid Position:

348

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

74.4

41.9

Major BPS

87.6

0.93

0.9

89.3

Major PPT

70.1

0.45

1.1

63.4

46.3

Minor 5ss

49.9

-0

2.8

73.5

43.2

Minor BPS

-0.1

2.6

71.85

39.7

Associated Gene:

Gene:

PIGK

Ensembl Gene ID:

ENSAPLG00000008332

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008715

20099372 - 20161333

61962