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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20190899_20195869_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20190899 - 20195869
Intron Length:
4971

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
AGAAACTTAATT
Flanking Amino Acid:
DLFKRETGKDRKISNTWLST
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
90.9
0.92
0.7
88.9
28.1
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
59.1
0.36
1.5
70.48
39.8

Associated Gene:

Gene:
ST6GALNAC5
Ensembl Gene ID:
ENSAPLG00000008770
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009121
20183396 - 20255684
72289