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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20195792_20195869_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20195792 - 20195869
Intron Length:
78

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
GTACCAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGTAGCTTATAT
Flanking Amino Acid:
DLFKRETGKDRSAQRDYHTH
Intron Amino Acid Position:
236

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.6
0.91
0.8
82.1
24.6
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
68.6
0.42
1
63.5
41.6
Minor 5ss
27.3
-2.6
2.7
30.6
42.8
Minor BPS
48.2
-0
2.1
71.02
45.2

Associated Gene:

Gene:
ST6GALNAC5
Ensembl Gene ID:
ENSAPLG00000008770
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036200
20195373 - 20255684
60312