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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20322004_20390065_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20322004 - 20390065
Intron Length:
68062

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TGTATTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TGTATTTTTACA
Flanking Amino Acid:
AVFKKETGKDRVQSGSYLST
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
75.7
40.1
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
85.8
0.81
0.8
80
37.5
Minor 5ss
37.3
-1.4
3
52.6
43.7
Minor BPS
56.3
0.19
1.6
68.13
37.8

Associated Gene:

Gene:
ST6GALNAC3
Ensembl Gene ID:
ENSAPLG00000008973
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036328
20320106 - 20533911
213806
ENSAPLT00000033107
20316932 - 20532277
215346
ENSAPLT00000009336
20320106 - 20462219
142114