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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20390476_20433851_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20390476 - 20433851
Intron Length:
43376

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGGCCT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTCTTCCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATATAT
U12 Branch Point Sequence:
ACTTCCATATAT
Flanking Amino Acid:
YGYVNVKTQEPLHLDCDLCA
Intron Amino Acid Position:
71

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.9
76.1
39.5
Major BPS
59.1
0.23
1.1
56.7
39.1
Major PPT
91.4
0.93
0.6
84.6
30.4
Minor 5ss
33.4
-1.9
3.4
48.4
47.3
Minor BPS
50.7
0.1
2
72.83
43.6

Associated Gene:

Gene:
ST6GALNAC3
Ensembl Gene ID:
ENSAPLG00000008973
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036328
20320106 - 20533911
213806
ENSAPLT00000033107
20316932 - 20532277
215346
ENSAPLT00000009336
20320106 - 20462219
142114