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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20434047_20533884_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20434047 - 20533884
Intron Length:
99838

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTTAT
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTATTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTCAATACTT
Flanking Amino Acid:
MAFLLRVTTRKSVVAVSFI
Intron Amino Acid Position:
10

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
80.5
29.8
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
83.1
0.74
0.9
76.7
36.2
Minor 5ss
36.9
-1.5
3
49.9
46.4
Minor BPS
53.1
0.18
2.1
82.17
39.2

Associated Gene:

Gene:
ST6GALNAC3
Ensembl Gene ID:
ENSAPLG00000008973
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000036328
20320106 - 20533911
213806