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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20565264_20565832_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20565264 - 20565832
Intron Length:
569

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAAGTAA
5'SS Class:
major
3'SS Sequence:
CCTATTCCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCTAT
U12 Branch Point Sequence:
TTTTTCCTATTC
Flanking Amino Acid:
VVVGFESDQKGLPKVRFLCG
Intron Amino Acid Position:
472

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1.1
65.2
37.1
Major BPS
68.8
0.47
1.3
66.7
41.7
Major PPT
79.2
0.66
0.8
72.4
32.3
Minor 5ss
35
-1.7
3.3
37.4
47.4
Minor BPS
57
0.2
1.9
74.44
36.6

Associated Gene:

Gene:
PIF1
Ensembl Gene ID:
ENSAPLG00000009068
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009436
20562222 - 20570152
7931