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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20567609_20568004_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20567609 - 20568004
Intron Length:
396

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGAGA
5'SS Class:
strong_major
3'SS Sequence:
TTTGGATCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAT
U12 Branch Point Sequence:
TTTTTTTGGATC
Flanking Amino Acid:
ISLLSAVRLGRCTEEVTSLL
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.7
0.84
0.9
74.8
37
Major BPS
78.8
0.71
1
67.6
40.6
Major PPT
72.2
0.5
1
62.7
43.3
Minor 5ss
26.2
-2.7
2.9
30.9
42.7
Minor BPS
61.2
0.33
1.4
73.19
31.6

Associated Gene:

Gene:
PIF1
Ensembl Gene ID:
ENSAPLG00000009068
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009436
20562222 - 20570152
7931