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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20569116_20569210_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20569116 - 20569210
Intron Length:
95

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCCCCTGCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
GCTTCCCCAAGC
Flanking Amino Acid:
IGGTTLHAFAGIGSGKAPLE
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.4
0.72
1
73.2
36.2
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
72.4
0.5
0.9
65.5
36.1
Minor 5ss
33.8
-1.8
3.7
49.8
46.8
Minor BPS
46.8
-0.2
2.1
60.3
44.6

Associated Gene:

Gene:
PIF1
Ensembl Gene ID:
ENSAPLG00000009068
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009436
20562222 - 20570152
7931