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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20570442_20570563_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20570442 - 20570563
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GCG|GTGAGGCGG
5'SS Class:
major
3'SS Sequence:
ATTTCTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCATTAATT
Flanking Amino Acid:
TQYGLNPLRRVHTVTKKPMS
Intron Amino Acid Position:
497

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
51.7
46.6
Major BPS
100
1.24
0.5
100
0
Major PPT
90.7
0.92
0.7
89
27.2
Minor 5ss
25.2
-2.9
3.1
30.3
42.8
Minor BPS
82.6
1.1
1.4
97.41
26.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009104
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009466
20568953 - 20571463
2511