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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20570624_20570793_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20570624 - 20570793
Intron Length:
170

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGGAAG
5'SS Class:
strong_major
3'SS Sequence:
CTTAAACCAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTCTCTTAAAC
Flanking Amino Acid:
WHDNIEEPADEKFLNVIHHA
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1
71.3
40.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
63.1
0.3
1
55.9
38.7
Minor 5ss
31.8
-2.1
3.1
36.5
41.9
Minor BPS
68.2
0.55
1.4
73.98
35.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009104
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009466
20568953 - 20571463
2511