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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20570898_20571156_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20570898 - 20571156
Intron Length:
259

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGAGTAGA
5'SS Class:
strong_major
3'SS Sequence:
AATTGTTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
CAGCCTATAATT
Flanking Amino Acid:
QEIGWNTTPLIDIDRTDRRL
Intron Amino Acid Position:
552

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
75.8
35.2
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
79.4
0.66
0.9
70
45
Minor 5ss
29.8
-2.3
2.6
30.5
37.5
Minor BPS
49.8
0.06
1.6
63.22
41.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000009104
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009466
20568953 - 20571463
2511