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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20573173_20573355_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20573173 - 20573355
Intron Length:
183

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGAGG
5'SS Class:
strong_major
3'SS Sequence:
CTAACGTTCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
TGTCTTCTAACG
Flanking Amino Acid:
LRAMRKYGKKVQIEILQRRQ
Intron Amino Acid Position:
181

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.5
42.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
68.9
0.43
1
65
40.8
Minor 5ss
26.2
-2.7
2.9
30.6
42.9
Minor BPS
52.9
-0
1.7
61.98
39.8

Associated Gene:

Gene:
EBNA1BP2
Ensembl Gene ID:
ENSAPLG00000009109
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043708
20570928 - 20576940
6013
ENSAPLT00000009490
20570928 - 20576940
6013