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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20574880_20575136_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20574880 - 20575136
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
GCTGTCTCCCTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTGAC
U12 Branch Point Sequence:
TACCCTCTGACA
Flanking Amino Acid:
PENDFQREMSFYRQAQAAVL
Intron Amino Acid Position:
109

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
69.1
0.47
1
60.7
37.6
Major PPT
67
0.38
0.9
58.3
38.4
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
50
-0
1.7
61.53
38.3

Associated Gene:

Gene:
EBNA1BP2
Ensembl Gene ID:
ENSAPLG00000009109
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043708
20570928 - 20576940
6013
ENSAPLT00000009490
20570928 - 20576940
6013