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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20576142_20576228_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20576142 - 20576228
Intron Length:
87

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCCCG
5'SS Class:
strong_major
3'SS Sequence:
GTTCTCTCCGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTGAC
U12 Branch Point Sequence:
CGCTCCTGACCC
Flanking Amino Acid:
SEDSSLSDSELQEAFAKGAL
Intron Amino Acid Position:
26

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
62.3
43.9
Major BPS
68.9
0.47
1
59.2
39.1
Major PPT
78.7
0.65
0.8
73.3
31.6
Minor 5ss
32.7
-2
3
39.3
46.1
Minor BPS
50.6
-0
1.8
59.68
45.2

Associated Gene:

Gene:
EBNA1BP2
Ensembl Gene ID:
ENSAPLG00000009109
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009490
20570928 - 20576940
6013