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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20596566_20596839_F

Intron Information:

Intron Rank:
21
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20596566 - 20596839
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAATAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
CTGTTTTTATCT
Flanking Amino Acid:
TKKKQAIQDPAPSSELLSSP
Intron Amino Acid Position:
1170

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.5
0.79
0.9
80.2
34.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
87
0.83
0.7
85.8
28.4
Minor 5ss
31.4
-2.1
2.9
42.5
44.3
Minor BPS
60.8
0.42
1.6
74.5
43.2

Associated Gene:

Gene:
CFAP57
Ensembl Gene ID:
ENSAPLG00000009398
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000009785
20576056 - 20597309
21254