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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20661164_20663803_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20661164 - 20663803
Intron Length:
2640

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATATG
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAC
U12 Branch Point Sequence:
TGATTTTGCACT
Flanking Amino Acid:
GVQMAQAGQPGKMPSGIKTN
Intron Amino Acid Position:
248

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
84.2
33.9
Major BPS
81.5
0.78
0.9
71.6
36.1
Major PPT
90.5
0.91
0.6
84.8
30
Minor 5ss
38.7
-1.3
2.9
50.6
45.9
Minor BPS
48.9
-0
1.9
69.88
41

Associated Gene:

Gene:
MED8
Ensembl Gene ID:
ENSAPLG00000010948
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011416
20660694 - 20669286
8593