Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20664053_20665043_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20664053 - 20665043

Intron Length:

991

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTATGTCAC

5'SS Class:

strong_major

3'SS Sequence:

TTTTTTTCTACAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTCT

U12 Branch Point Sequence:

TTTTTTTCTACA

Flanking Amino Acid:

SKEERESESGGLRQNKQTFN

Intron Amino Acid Position:

165

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.5

0.86

0.9

36.6

Major BPS

38.1

-0.7

4.3

71.7

44.6

Major PPT

95.8

1.03

0.5

19.1

Minor 5ss

40.6

-1

2.8

52.4

44.8

Minor BPS

57.1

0.22

1.8

74.8

36.5

Associated Gene:

Gene:

MED8

Ensembl Gene ID:

ENSAPLG00000010948

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000011416

20660694 - 20669286

8593