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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20665126_20665487_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20665126 - 20665487
Intron Length:
362

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCATTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGGTTTTCATT
Flanking Amino Acid:
AARISPDVAQKQIQSLNKMC
Intron Amino Acid Position:
138

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.4
0.86
0.9
77.6
32.8
Major BPS
100
1.24
0.5
100
0
Major PPT
89.3
0.88
0.7
84.5
30
Minor 5ss
30.6
-2.2
3.4
39.4
46.5
Minor BPS
49.8
0.07
1.8
70.08
42.4

Associated Gene:

Gene:
MED8
Ensembl Gene ID:
ENSAPLG00000010948
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011416
20660694 - 20669286
8593