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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20666252_20667294_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20666252 - 20667294
Intron Length:
1043

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGGCAT
5'SS Class:
strong_major
3'SS Sequence:
TTTGCTTTCCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
TCTTCTTTATTT
Flanking Amino Acid:
KLENEYDRLTWPSVLDSFAL
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
71.3
40.1
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
84
0.76
0.8
76.7
37.4
Minor 5ss
32.6
-2
3.4
44.3
44.6
Minor BPS
70
0.71
1.5
83.14
39

Associated Gene:

Gene:
MED8
Ensembl Gene ID:
ENSAPLG00000010948
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011416
20660694 - 20669286
8593