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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20667414_20669280_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20667414 - 20669280
Intron Length:
1867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCTTTTTTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCTCAT
U12 Branch Point Sequence:
TTGTCCTCATCC
Flanking Amino Acid:
MQREEKQLELTL
Intron Amino Acid Position:
3

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
82.3
0.8
0.9
81.8
30.8
Major PPT
88.3
0.86
0.6
87.9
22.1
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
62.2
0.36
1.9
74.71
42

Associated Gene:

Gene:
MED8
Ensembl Gene ID:
ENSAPLG00000010948
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011416
20660694 - 20669286
8593