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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20669628_20669737_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20669628 - 20669737
Intron Length:
110

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGCGGG
5'SS Class:
major
3'SS Sequence:
GCCCCCGCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTCTCAG
U12 Branch Point Sequence:
CCCGTCTCAGCG
Flanking Amino Acid:
VIWALPEPELVQSENELEVL
Intron Amino Acid Position:
50

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.4
0.57
1
55.8
43.4
Major BPS
53.2
0.08
1.7
65.3
43.7
Major PPT
60.8
0.24
0.9
53.1
31
Minor 5ss
30.4
-2.2
3.3
34.5
43.8
Minor BPS
41.4
-0.7
1.8
38.07
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024178
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020315
20668921 - 20670515
1595