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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20669912_20670248_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20669912 - 20670248
Intron Length:
337

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TCTGTTTCCACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GCCTCAT
U12 Branch Point Sequence:
TCTGTTTCCACA
Flanking Amino Acid:
LDLSPSTGIVDDSTGEIIFD
Intron Amino Acid Position:
108

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
72.9
31.3
Major BPS
64.6
0.36
1.3
67.6
40.6
Major PPT
81
0.7
0.8
75.9
32.8
Minor 5ss
27.7
-2.6
3
29.3
37
Minor BPS
45.3
-0.3
2
58
42.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024178
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000020315
20668921 - 20670515
1595