Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20734732_20735440_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20734732 - 20735440

Intron Length:

709

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGAGTCAG

5'SS Class:

strong_major

3'SS Sequence:

GTGTGTCTCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

GTCTCAC

U12 Branch Point Sequence:

CCTGTCTCACCT

Flanking Amino Acid:

PLQQWLKRRQAMQVTCASPP

Intron Amino Acid Position:

209

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.8

38.4

Major BPS

67.3

0.43

1.2

71.3

36.7

Major PPT

71.2

0.48

61.8

44.4

Minor 5ss

28.1

-2.5

2.7

31.4

42.8

Minor BPS

46.8

-0.1

1.9

62.74

47.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000018480

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046330

20733120 - 20739551

6432