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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20756628_20756720_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20756628 - 20756720
Intron Length:
93

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGACGT
5'SS Class:
major
3'SS Sequence:
GTCTGTTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTGGAG
U12 Branch Point Sequence:
TGCTGGAGGACC
Flanking Amino Acid:
GMSHFYYWYSRDVPTACAVS
Intron Amino Acid Position:
79

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
66.4
45.1
Major BPS
37
-0.8
1.7
30.7
44
Major PPT
75.6
0.58
0.9
72.8
37.5
Minor 5ss
32.3
-2
3.4
47.9
47.6
Minor BPS
35.6
-1.1
2.5
48.03
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030907
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043335
20753910 - 20759774
5865
ENSAPLT00000039842
20753910 - 20759774
5865
ENSAPLT00000033221
20753910 - 20759388
5479
ENSAPLT00000045975
20753910 - 20759774
5865