Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20756897_20757039_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20756897 - 20757039

Intron Length:

143

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

TGG|GTGAGTCCC

5'SS Class:

major

3'SS Sequence:

ACGTTCCCTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ACGCCAC

U12 Branch Point Sequence:

AGGAGGGGAACG

Flanking Amino Acid:

HQRELSVDVVGLIGPPVNIS

Intron Amino Acid Position:

138

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.9

0.71

65.8

40.2

Major BPS

42.5

-0.4

1.2

43.8

38.4

Major PPT

73.7

0.53

0.9

66.6

Minor 5ss

29.6

-2.3

2.7

28.8

35.5

Minor BPS

29.6

-1.6

2.5

31.83

40.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030907

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000043335

20753910 - 20759774

5865

ENSAPLT00000039842

20753910 - 20759774

5865

ENSAPLT00000033221

20753910 - 20759388

5479

ENSAPLT00000045975

20753910 - 20759774

5865