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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20757780_20758064_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
20757780 - 20758064
Intron Length:
285

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCACCATGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCACCAT
U12 Branch Point Sequence:
GCTCGCTCACCA
Flanking Amino Acid:
YQETPRGAGIREDMWQRCEE
Intron Amino Acid Position:
340

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
53
0.08
1.4
63
42.7
Major PPT
66.4
0.37
1
58.7
37
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
43.2
-0.5
2.1
53.68
44.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030907
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039842
20753910 - 20759774
5865
ENSAPLT00000033221
20753910 - 20759388
5479
ENSAPLT00000045975
20753910 - 20759774
5865
ENSAPLT00000043335
20753910 - 20759774
5865