Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20758899_20759014_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

20758899 - 20759014

Intron Length:

116

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGGACG

5'SS Class:

strong_major

3'SS Sequence:

TCCCCGCGCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

CCTCCAC

U12 Branch Point Sequence:

CTGCCCTCCACG

Flanking Amino Acid:

GLRCAFPALCSTVKQRLWPP

Intron Amino Acid Position:

528

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.3

0.93

0.9

76.1

39.5

Major BPS

-0.1

1.3

55.7

39.5

Major PPT

61.9

0.27

0.9

52.9

36.7

Minor 5ss

32.6

-2

3.1

40.4

45.5

Minor BPS

46.7

-0.4

2.1

52.86

47.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000030907

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000033221

20753910 - 20759388

5479

ENSAPLT00000043335

20753910 - 20759774

5865