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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20759103_20759187_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20759103 - 20759187
Intron Length:
85

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGGC
5'SS Class:
strong_major
3'SS Sequence:
CCGCCCCCCGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCCAAC
U12 Branch Point Sequence:
GCCGCCCCAACC
Flanking Amino Acid:
FLHDSGKQGQALYKQPAEEA
Intron Amino Acid Position:
558

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
67.9
37.4
Major BPS
44.9
-0.3
1.2
48
33
Major PPT
64.8
0.33
0.8
57.5
26.9
Minor 5ss
24.1
-3
3.3
32
42.8
Minor BPS
45.1
-0.3
2
52
45.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030907
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000045975
20753910 - 20759774
5865
ENSAPLT00000033221
20753910 - 20759388
5479