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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20760228_20760747_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20760228 - 20760747
Intron Length:
520

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CCG|GTGAGAGGC
5'SS Class:
major
3'SS Sequence:
TGTGTGAACGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAA
U12 Branch Point Sequence:
TGTTCAATACCT
Flanking Amino Acid:
SGSKTPGRTPGKSGSKIQST
Intron Amino Acid Position:
67

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1
60.7
38.7
Major BPS
75.6
0.64
1.1
77.7
37.1
Major PPT
62.1
0.27
1.1
55.4
43.7
Minor 5ss
25.8
-2.8
3.2
33.5
42
Minor BPS
51.3
0.12
2.2
79.33
42

Associated Gene:

Gene:
CDC20
Ensembl Gene ID:
ENSAPLG00000010237
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010684
20759188 - 20765174
5987