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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20760894_20761625_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20760894 - 20761625
Intron Length:
732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTGAA
U12 Branch Point Sequence:
TCTTGCTGAGAG
Flanking Amino Acid:
DPAEDSPTKKEQQKAWAVNL
Intron Amino Acid Position:
116

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
69.4
0.48
1.2
63.4
44.3
Major PPT
84.7
0.78
0.7
78
30.8
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
44.1
-0.5
2.2
53.48
46.9

Associated Gene:

Gene:
CDC20
Ensembl Gene ID:
ENSAPLG00000010237
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010684
20759188 - 20765174
5987