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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20762304_20762514_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20762304 - 20762514
Intron Length:
211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATT|GTGAGTAGC
5'SS Class:
major
3'SS Sequence:
TTCCAAACTGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCCAAA
U12 Branch Point Sequence:
CTCTTCCAAACT
Flanking Amino Acid:
LDAPEIRNDYYLNLIDWSSQ
Intron Amino Acid Position:
191

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.7
0.51
1
67
38.3
Major BPS
62.7
0.32
1.2
71
33.2
Major PPT
70.9
0.47
0.9
63.4
36.8
Minor 5ss
33.2
-1.9
2.8
42.7
38.4
Minor BPS
49.7
0.06
2
71.51
45.7

Associated Gene:

Gene:
CDC20
Ensembl Gene ID:
ENSAPLG00000010237
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010684
20759188 - 20765174
5987