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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20762712_20763391_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20762712 - 20763391
Intron Length:
680

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTGCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTCTCTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
CTTTGGAGAACT
Flanking Amino Acid:
AVGTSNAEVQLWDIQQQKRL
Intron Amino Acid Position:
257

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.3
0.97
0.7
80.2
27.1
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
81.7
0.71
0.8
74.4
36.5
Minor 5ss
27.5
-2.6
3
32.5
42.3
Minor BPS
42.3
-0.5
2.6
69.52
46.9

Associated Gene:

Gene:
CDC20
Ensembl Gene ID:
ENSAPLG00000010237
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010684
20759188 - 20765174
5987