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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20770021_20770403_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20770021 - 20770403
Intron Length:
383

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTGAGTCTG
5'SS Class:
strong_major
3'SS Sequence:
GCCTTATTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCCCAT
U12 Branch Point Sequence:
TTTGCCTTATTC
Flanking Amino Acid:
WKKHITAIQLAQFVIVSVHI
Intron Amino Acid Position:
274

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.6
0.77
0.9
70.5
41.3
Major BPS
63.5
0.33
1.2
72.5
34.6
Major PPT
73.8
0.53
0.9
65
40.3
Minor 5ss
32.5
-2
3
38.1
40.9
Minor BPS
67.8
0.54
1.7
77.93
38.5

Associated Gene:

Gene:
ELOVL1
Ensembl Gene ID:
ENSAPLG00000010532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010991
20769764 - 20772386
2623