About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20770541_20770695_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
20770541 - 20770695
Intron Length:
155

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGATGG
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTGAT
U12 Branch Point Sequence:
ACTTGTCTAACA
Flanking Amino Acid:
SWWWGAKFGPGGMGSFHAMI
Intron Amino Acid Position:
228

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.1
0.92
0.9
72.5
39.9
Major BPS
79.8
0.74
0.9
69.4
37.7
Major PPT
71.9
0.49
1
66.2
39.1
Minor 5ss
37.3
-1.4
3
47.6
47.9
Minor BPS
49.9
-0
2.1
65.95
40.8

Associated Gene:

Gene:
ELOVL1
Ensembl Gene ID:
ENSAPLG00000010532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010991
20769764 - 20772386
2623