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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20770802_20771091_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20770802 - 20771091
Intron Length:
290

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
GCTCTTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCCTGAT
U12 Branch Point Sequence:
TGGTCCCTGATG
Flanking Amino Acid:
FSKFIELTDTVIFVLRKKNE
Intron Amino Acid Position:
193

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
66.4
0.41
1.1
56.9
40.5
Major PPT
78.3
0.64
0.9
72.2
37.8
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
53.8
-0
1.8
59.98
42.2

Associated Gene:

Gene:
ELOVL1
Ensembl Gene ID:
ENSAPLG00000010532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010991
20769764 - 20772386
2623