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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20771149_20771315_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20771149 - 20771315
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGCTCT
5'SS Class:
major
3'SS Sequence:
TCTTCTGTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTCAT
U12 Branch Point Sequence:
CTCATGTTACCC
Flanking Amino Acid:
DFSQDPKALRMVSVAWLFVF
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1
68.4
39.3
Major BPS
77.2
0.67
1.2
79.6
35.6
Major PPT
85.1
0.79
0.8
80.1
31.8
Minor 5ss
40.6
-1
3
48.7
47
Minor BPS
43.6
-0.5
2.3
53.58
44.7

Associated Gene:

Gene:
ELOVL1
Ensembl Gene ID:
ENSAPLG00000010532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010991
20769764 - 20772386
2623