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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20771397_20771563_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
20771397 - 20771563
Intron Length:
167

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTGC
5'SS Class:
strong_major
3'SS Sequence:
GCTCTCATTGCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
GATGCTCTCATT
Flanking Amino Acid:
VGLSIYIVYEFLMAGWLTGY
Intron Amino Acid Position:
147

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.7
0.96
0.8
78.3
32.5
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
76.7
0.6
0.9
69.8
35.2
Minor 5ss
35.1
-1.7
2.8
43.9
43.9
Minor BPS
44.4
-0.3
2
62.1
42.4

Associated Gene:

Gene:
ELOVL1
Ensembl Gene ID:
ENSAPLG00000010532
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010991
20769764 - 20772386
2623