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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20815586_20815960_F

Intron Information:

Intron Rank:
80291
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
20815586 - 20815960
Intron Length:
375

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCCTG
5'SS Class:
strong_major
3'SS Sequence:
CGGCTCAAGTGAG|A
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TCCAGAT
U12 Branch Point Sequence:
CCCTCCAGATCG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
68.8
43.8
Major BPS
61.5
0.29
1.1
56.9
40.5
Major PPT
42.8
-0.4
1.7
43.9
41.4
Minor 5ss
36
-1.6
3.2
46.7
48.6
Minor BPS
42.6
-0.7
2
44.68
47.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226