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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20817014_20818500_F

Intron Information:

Intron Rank:
80294
Intron Class:
major
Intron Phase:
Intron Coordinates:
20817014 - 20818500
Intron Length:
1487

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
GTGTTCCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
76.7
33.9
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
81.8
0.71
0.8
74.3
35.9
Minor 5ss
34.2
-1.8
2.8
40.7
45.3
Minor BPS
49.3
0.03
1.9
69.36
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226