About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_2082324_2083166_F

Intron Information:

Intron Rank:
126410
Intron Class:
major
Intron Phase:
Intron Coordinates:
2082324 - 2083166
Intron Length:
843

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGAACA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTCTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.9
0.89
0.8
79.5
28.2
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
94
0.99
0.5
88.9
28.2
Minor 5ss
28.3
-2.5
2.7
32.3
41.9
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018124
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027687
2053942 - 2083686
29745
ENSAPLT00000026173
2081922 - 2083182
1261