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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20824994_20825348_F

Intron Information:

Intron Rank:
80306
Intron Class:
major
Intron Phase:
Intron Coordinates:
20824994 - 20825348
Intron Length:
355

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
AATCTCTCCTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CCTTCAT
U12 Branch Point Sequence:
ATCCCCTTCATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
75
0.62
1.1
77.2
36
Major PPT
73.8
0.53
0.9
70.4
35.3
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
57.3
0.21
1.8
65.94
40

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226