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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20826543_20826612_F

Intron Information:

Intron Rank:
80309
Intron Class:
major
Intron Phase:
Intron Coordinates:
20826543 - 20826612
Intron Length:
70

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGAGG
5'SS Class:
major
3'SS Sequence:
TCCTGTGTTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTTAT
U12 Branch Point Sequence:
GGATGCTTATTC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.7
44.4
Major BPS
76.2
0.65
1.1
65.7
43.2
Major PPT
77.9
0.63
0.9
71.9
38
Minor 5ss
31
-2.2
3.2
39.7
45.9
Minor BPS
47.9
-0.1
2
56.75
41.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226