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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_20828256_20828358_F

Intron Information:

Intron Rank:
80314
Intron Class:
major
Intron Phase:
Intron Coordinates:
20828256 - 20828358
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTACGAATA
5'SS Class:
major
3'SS Sequence:
ATTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAAACAT
U12 Branch Point Sequence:
TGTGTGATGACG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.5
0.63
1
73.7
36.9
Major BPS
54.4
0.11
1
61.4
34.3
Major PPT
90.2
0.9
0.7
85.3
28.7
Minor 5ss
36.1
-1.6
3.2
45.7
44.4
Minor BPS
41.6
-0.8
2.3
51.47
43.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000011279
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000011859
20815562 - 20850787
35226