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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_8_208284_220795_R

Intron Information:

Intron Rank:
140309
Intron Class:
major
Intron Phase:
Intron Coordinates:
208284 - 220795
Intron Length:
12512

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACGGTGA
5'SS Class:
major
3'SS Sequence:
GTAATCTTTCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGTAAT
U12 Branch Point Sequence:
ATTGCCCTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
66.8
41.3
Major BPS
84.4
0.85
1.1
84
34.5
Major PPT
75.6
0.58
1
66
44.9
Minor 5ss
35
-1.7
3.4
47.2
48.2
Minor BPS
57.3
0.22
1.9
72.12
39.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000022860
Chromosome:
8

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040539
167573 - 224469
56897